Metaneighbor analysis
WebProvides a general-purpose tool for dynamic report generation in R using Literate Programming techniques. Web6 dec. 2024 · MetaNeighbor: a method to rapidly assess cell type identity using both functional and random gene sets. MetaNeighbor allows users to quantify cell type …
Metaneighbor analysis
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Web noarch/bioconductor-metaneighbor-1.12.0-r41hdfd78af_0.tar.bz2: 1 year and 6 months ago bioconda 913: main conda: 7.7 MB noarch/bioconductor-metaneighbor-1.10.0-r40hdfd78af_1.tar.bz2: 1 year and 8 months ago WebSkilled in Statistical Data Analysis, Next Generation Sequencing, Single Cell Sequencing, Spatial transcriptomics, Pharmacology, and Epigenetics in Psychiatry studies. Learn more about Stefano ...
Web25 sep. 2024 · Then in order to compare the relationships of each cell type, the MetaNeighbor analysis was performed . Single-cell blast analysis In our previous study, we employed the scHCL reference and the normal bone marrow reference, which was built in the same method of integrating the top 20 marker genes for each normal bone marrow … Web13 apr. 2024 · An approach, CorALS, is proposed to enable the construction and analysis of large-scale correlation networks for high-dimensional biological data as an open-source framework in Python.
Web8 nov. 2024 · MetaNeighbor: Runs MetaNeighbor In MetaNeighbor: Single cell replicability analysis Description Usage Arguments Value See Also Examples View … WebWith MetaNeighbor, we proposed an efficient … Single-cell RNA-sequencing data have significantly advanced the characterization of cell-type diversity and composition. However, cell-type definitions vary across data and analysis pipelines, raising concerns about cell-type validity and generalizability.
Web22 sep. 2024 · 在MetaNeighborUs函数中，输入表达矩阵，高变基因的列表，每个细胞对应的类型标签以及细胞所属的样本。 假设共有n个细胞，共有两个样本，共有m个高变基因 …
Web7 okt. 2024 · CSHL 副教授 Jesse Gillis 的实验室开发了一种基于统计的计算机工具，可根据细胞组成部分的相似性对细胞进行分类。这个名为 MetaNeighbor 的程序使用 RNA 转录 … eaton wh004WebAbstract Since its selection as the method of the year in 2013, single-cell technologies have become mature enough to provide answers to complex research questions. With the growth of single-cell profiling technologies, there has also been a significant increase in data collected from single-cell profilings, resulting in computational challenges to process … companies that research family treeWeb2 mrt. 2024 · 另一种方法MetaNeighbor，被设计用来测试细胞类型在多个scRNA序列数据集中是否一致。它通过计算跨数据集的细胞-细胞Spearman相关性来实现，允 … companies that repurpose wedding dressesWeb5 okt. 2024 · Various R programming tools for plotting data, including: - calculating and plotting locally smoothed summary function as ('bandplot', 'wapply'), - enhanced versions ... companies that resurface countertops near meWebWe developed a statistical tool called MetaNeighbor that uses a neighbor voting system to identify cell types with consistent expression signatures, suggesting broad support across a variety of experiments and computational pipelines. eaton wfd30-la-sp-lWeb27 aug. 2024 · MetaNeighbor: a method to rapidly assess cell type identity using both functional and random gene sets. Megan Crow, Stephan Fischer, Sara Ballouz, Manthan … eaton wfd30Web8 mei 2024 · Mesenchymal stem/stromal cells (MSCs) are promising cell source for regenerative medicine and treatment of autoimmune disorders. Comparing MSCs from different tissues at single cell level is fundamental for optimizing clinical applications. Here we analyzed single cell RNA-seq data of MSCs from 4 tissues, namely umbilical cord, … companies that restore old photos